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12
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11k
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Deseq2 rlog or 'regular' normalization?
Deseq2
rlog transformation
data visualization
8.6 years ago
sunil.mangalam
• 0
4
votes
3
replies
716
views
RNA-Seq analysis with DESeq2: showing two conditions do *not* significantly differ
deseq2
RNA-Seq
uniform distribution
data visualization
updated 4.2 years ago by
Steve Lianoglou
★ 13k • written 4.2 years ago by
Ndimensional
▴ 20
0
votes
1
reply
1.9k
views
Pathview: visualization of data
pathview
data visualization
updated 8.2 years ago by
Luo Weijun
★ 1.6k • written 8.2 years ago by
Guido Hooiveld
★ 3.9k
1
vote
1
reply
2.0k
views
Using pathview with uncommon species leads to Errors
pathview
Kegg
rnaseq
data visualization
updated 7.8 years ago by
Luo Weijun
★ 1.6k • written 7.8 years ago by
rafre
• 0
0
votes
1
reply
2.5k
views
Input file of NGS data for Pathview
rnaseq
pathview
data visualization
updated 8.5 years ago by
Luo Weijun
★ 1.6k • written 8.5 years ago by
amoltej
▴ 10
0
votes
1
reply
621
views
DNA Deferential metheylation
data visualization
7.4 years ago
tarek_2050
• 0
0
votes
0
replies
828
views
Visualize FlowSet by Date
FlowSet
data visualization
cellcounts
6.9 years ago
Maria
• 0
1
vote
0
replies
1.1k
views
Job:
Summer Vacation Studentships in Data Science, MRC Cancer Unit, University of Cambridge, UK
data science
data visualization
machine learning
cancer
Job
6.1 years ago • updated 5.9 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
461
views
how to construct mds plot of differentially expressed genes?
differentially expressed genes
mds plot
data visualization
5.1 years ago
pratikshasharma47
• 0
0
votes
0
replies
1.6k
views
Job:
Multiple postdoctoral fellowships are available immediately in the Gehlenborg Lab in the Department of Biomedical Informatics at Harvard Medical Scho…
bioinformatics
bioinformatician job
data visualization
Job
8.6 years ago
Doe, Aimee
▴ 40
10 results • Page
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Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results
by
swbarnes2
★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Comment: Log-cpm values from limma
by
Gordon Smyth
50k
No, it does not mean that. `voom()` uses the design matrix, including the W covariates, to compute precision weights but not to adjust the …
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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